diff --git a/firmware/AtomBusMon.c b/firmware/AtomBusMon.c
index 6385641..bbd331e 100644
--- a/firmware/AtomBusMon.c
+++ b/firmware/AtomBusMon.c
@@ -1382,6 +1382,8 @@ void initialize() {
   CTRL_PORT = 0;
   Serial_Init(57600,57600);
   version();
+  // Update the hardware copy of the breakpoints
+  uploadBreakpoints();
   hwCmd(CMD_RESET, 0);
   hwCmd(CMD_FIFO_RST, 0);
   setSingle(1);